Research has shown that Borrelia (Lyme bacteria) produce neurotoxins in the body and can cause symptoms which are similar to encephalopathy as well as on-going inflammation within the body. They are also know to interfere with hormonal activity by blocking the hormone receptors.
The longer a person has been ill with Lyme disease, the more neurotoxins will be found in the body. The neurotoxins are thought to be stored in fatty tissues of the body and once they get there, they persist for a long time.
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